Package index • diffdriver

All functions
`ddmcode()`	Add intercept, if have functtypecode, then code and move to the front. different from driverMAPS! only allows functtypecode =7 \|\|8 when functypecode is included in selectvars.
`ddmodel()`	diffDriver model
`ddmodel_binary()`	diffDriver model only for binary phenotype.
`ddmodel_binary_simple()`	diffDriver model only for binary phenotype, assuming bmr the same across samples.
`diffdriver()`	Run diffDriver with Input Files
`genebinom()`	gene level binomial test
`genefisher()`	gene level fisher's exact test
`genelr()`	gene level logistic regression
`mlr()`	gene level multiple linear regression
`mlr.v2()`	gene level multiple linear regression, correcting for total number of mutations
`optifix()`	optifix. Optimise with fixed parameters
`plot_mut()`	plot phenotype, mutation and annotation for a gene across samples

Reference