Package index • scads

All functions
`adp_gcEffects()`	Adaptive GC Effects Estimation for ChIP-seq Read Counts
`build_sldsc_command()`	Build S-LDSC Shell Commands
`compute_lfc_stats2()`	Helper functions for scads
`compute_topic_pvalues()`	Compute Topic P-values and Binarize Peak Assignments
`demo_count_matrix`	Demo count matrix
`get_annot_beds()`	Generate BED Files from Topic Annotations
`get_average_bg()`	Estimate "background" accessibility rate from a reference cell‐type peak list
`get_cs()`	Compute Single-Cell Level Scores (c_i)
`get_gc_baseline()`	Calculate GC Baseline Correction Parameters for Topic-Specific Count Data
`parse_peak_ranges()`	Parse Peak Range Names into Components
`pred_baseline_mu0()`	Predict Baseline Mean Values (mu0) from GC Content
`prep_gcEffects_input()`	Prepare GC content input for GC-effect correction
`run_fastTopics()`	Run fastTopics and Generate Topic Annotations
`run_sldsc()`	Run S-LDSC Pipeline: Calculate disease cell score using hg19 BED and Baseline v2.2
`scads()`	scads: A package for using scATAC-seq data and GWAS sumstats to calculate disease cell score
`scads_log()`	Log a message with timestamp

Reference